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A. Blaschke

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Open access Sep 2026

LAMBDA: a prophage detection benchmark for genomic language models.

This work introduces LAMBDA, a benchmark designed to rigorously evaluate genome language model embeddings through phage-bacteria sequence discrimination across four categories of increasing complexity: probing tasks, fine-tuning assessments, diagnostic tests, and genome-wide prophage detection.

LeAnn M. Lindsey, Nicole L. Pershing, K. Dufault-Thompson et al. · 0 citations

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