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neuroscience

12 papers

#machine learning Preprint Open access Sep 2026

Prospective Coding Improves Learning in Deep Continuous-Time Recurrent Networks

Temporal integration gives continuous-time recurrent networks memory, but in deep stacks it also delays bottom-up signals and attenuates top-down errors. We develop Recursive Quadrature Filters (RQFs), biologically motivated complex-valued temporal filters that are a special case of diagonal state-space models (SSMs), and ask whether this failure mode can be addressed by making each layer's bottom-up input prospective. Starting from an energy model, we derive the RQF dynamics and show that each RQF is a band-pass filter whose learnable parameters control its tuning frequency and bandwidth. We then make each layer's bottom-up input prospective using a parameter-free two-tap update that leaves the recurrent transition and parallel scan unchanged. We extend this correction to general diagonal SSMs and show that it mitigates depth-dependent gradient attenuation when temporal gradients are truncated, i.e., spatial-only backpropagation. We evaluate the intervention in RQFs, S5, and ORGaNICs (a nonlinear gated RNN) trained using full backpropagation through time (BPTT) and spatial-only backpropagation. Under full BPTT, prospective variants match or outperform their non-prospective controls in every model and configuration. A non-residual width-32 six-layer RQF reaches 96.09% accuracy on raw-audio Speech Commands with 31.9k parameters; a width-64 six-layer RQF reaches 83.56% on the 16,384-step Path-X task. These results identify RQFs as a parameter-efficient recurrent substrate and prospective-input coding as an input-side correction for deep continuous-time recurrent networks.

Shivang Rawat, Mirko Morello, Flaviano Morone et al. · 0 citations
#artificial intelligence Preprint Open access Sep 2026

Inferring Affective Consciousness in an Artificial Agent: A Case Study

Creatures that display 'hedonic place preference behaviour' are thought by many scientists to experience feelings, on the assumption that their attraction to pleasure-producing substances which lack nutritional value (e.g. cocaine, morphine) cannot easily be attributed to unconscious instinctual behaviour. In this paper, we discuss how a simple artificial agent that instantiates attributes of an affective system engaging in felt uncertainty about its intrinsic needs in relation to environmental resources can similarly display hedonic place preference behaviour -- through an apparently subjective form of information processing -- while simultaneously being entirely deter-ministic. We outline some implications of this artificially engineered behaviour for our understanding of the physical basis of consciousness and the experience of free will.

Mark Solms, St John Grimbly, Bruce Bassett et al. · 0 citations
#neuroscience Preprint Open access Sep 2026

Slow-Fast Brain-Computer Interfaces: Preventing Neuroadaptive Overfitting in AI-Mediated Neural Interfaces

Artificial intelligence (AI) is transforming brain-computer interfaces (BCIs) from task-specific neural decoders into adaptive systems that complete language, smooth movement, regulate rehabilitation support and adjust stimulation. These capabilities can increase speed, fluency, usability and clinical reach, yet conventional performance metrics may overlook losses in intent fidelity, authorship, agency, therapeutic challenge and durable clinical benefit. I define neuroadaptive overfitting as a closed-loop failure mode in which an AI-mediated BCI becomes over-optimized to short-term proxies of success, including reduced effort, rapid acceptance, lower workload or smooth task completion, while drifting from the user's durable goals. I then propose Slow-Fast BCI, a framework for pacing AI assistance according to decoder evidence, uncertainty, contextual and clinical stakes, fatigue, and user- or clinician-defined goals. The framework distinguishes fast assistance when intent is clear and stakes are low, guarded assistance under uncertainty and slow assistance when misalignment could compromise safety, agency, authorship, motor learning or therapeutic value. Across communication, motor-control, neurorehabilitation and closed-loop neuromodulation applications, I outline corresponding safeguards and evaluation measures. This Perspective argues that AI-mediated BCIs should be evaluated not only by decoding accuracy and task performance, but also by how AI assistance is deployed: when systems act autonomously, seek confirmation, preserve user effort or return control to the user.

Aarthy Nagarajan · 0 citations
#machine learning Preprint Open access Sep 2026

A Common Measure of Communication for Speech Brain-Computer Interfaces

Speech brain-computer interfaces (speech BCIs) translate neural activity into language, offering a path towards restoring speech for people with paralysis and, more broadly, enabling new forms of natural human-computer interaction. Despite this promise, the field lacks a common measure of progress because systems use different datasets, recording methods, types of speech, and vocabularies, so their reported scores are rarely comparable. Underlying this measurement problem are two unresolved questions: (i) what distribution of words should a speech BCI enable a user to communicate, and (ii) how much information from this distribution can a system convey. We address both by deriving open-vocabulary mutual information (OVMI), an information-theoretic quantity that measures the information conveyed by a decoder relative to a reference distribution over the words a user may wish to communicate. This allows capabilities measured under different conditions, such as distinct vocabularies, to be evaluated on a common communication scale. We show that ordinarily reported accuracy, word error rate (WER), and other metrics computed only over the words a system supports can overstate how much of a user's intended speech the system can communicate. We then use OVMI to compare existing systems, expose trade-offs between how much of the user's language a system supports and how accurately it decodes those words, show that these comparisons depend on what the user is expected to communicate, and demonstrate that selecting a vocabulary to maximise OVMI yields up to 16.3% relative improvement in accuracy across three speech domains. OVMI therefore provides the speech BCI community with a principled way to compare heterogeneous systems, improve vocabulary design, and measure progress in the field.

Dulhan Jayalath, Benjamin Ballyk, Oiwi Parker Jones · 0 citations
#artificial intelligence Preprint Open access Sep 2026

Interpretable Symptom Vectors for Depression in a Large Language Model

Patients with depression present with diverse symptom profiles, yet clinical practice routinely reduces this variation to a single severity score. Large language models (LLMs) can potentially capture various symptoms and their severity from patient speech. However, how depressive symptoms are represented inside LLMs remains poorly understood, limiting clinical trust. To examine whether internal model activations match clinician judgment, we analyzed the residual stream of Gemma-3-27B-PT using mechanistic interpretability techniques. Recording activations across symptom descriptions drawn from validated clinical instruments, we found that symptom groups geometrically separated the most at layer 21 across multiple distance metrics. Using Semantic Projection, we then projected held-out naturalistic text onto Symptom Vectors constructed from these instruments. The resulting per-symptom coefficients preserved clinician-annotated rank ordering across mood, somatic, and suicidality axes. Furthermore, a single depression vector in Layer 21 separates held-out depressive from non-depressive text (AUC = 0.789), which can be used as an emotional valence gate that restricts symptom projection to depressive speech. These results reveal a decorrelated, clinician-aligned symptom signal readable directly from internal activations, offering a mechanistic foundation for interpretable depression-assessment tools.

Fangyi Zhu, Ajay Subramanian, Allison Constant et al. · 0 citations
#machine learning Preprint Open access Sep 2026

Leakage-Audited Benchmarking Reveals Limited Evidence for Cross-Subject Auditory-Evoked EEG Vowel Perception Decoding

We tested whether auditory-evoked EEG supports subject-independent five-vowel perception decoding when trial identity, model identity, prediction provenance, and participant-level inference are controlled within a single benchmark. We reconstructed Study 2 event tables from OpenNeuro ds006104 version 1.0.1 and analysed the consonant-vowel pair task. One-to-one marker-stimulus pairing yielded 3,840 independent trials; control-condition selection and artifact rejection retained 1,094 epochs from 16 participants and 61 EEG channels. Thirteen unique implementations were evaluated using leave-one-subject-out testing, with participant metrics reconstructed from 36,102 trial predictions across 33 complete prediction replicas. Random Forest was numerically highest at 21.474% balanced accuracy (95% participant-bootstrap interval, 19.526-23.482%; chance, 20%), but neither its participant-level tests nor any implementation survived correction across the 13-model family. Deep-model performance was close to chance, and several architectures showed substantial seed-dependent variation and low trial-label agreement. An exploratory MDM analysis comprising 9,616 genuine refits across training cohorts of 3-15 participants showed no monotonic performance gain. Within this dataset and protocol, evidence for reliable cross-subject five-vowel decoding is limited. The benchmark provides a reproducible chain from source rows to retained epochs, predictions, participant-level metrics, multiplicity-adjusted inference, and bounded diagnostic analyses.

Xiaoyang Li, Zeyan Tao · 0 citations
#artificial intelligence Preprint Open access Sep 2026

Backspace as a Natural Experiment: An Accelerated Failure Time Model of Selective Post-Error Motor Impairment in Parkinsons Disease

Parkinson's disease (PD) selectively impairs distinct stages of motor control. Using backspace events as natural error-correction episodes in the public neuroQWERTY MIT-CSXPD dataset (n=57 subjects, 27 PD with UPDRS-III scores), we test whether passively-collected keystroke timing dissociates a variability-based pre-error monitoring signal from a speed-based post-error recovery signal. Pre-error typing instability does not track PD severity (r=-0.072, p=0.721), while post-error pause duration does (r=+0.656, p=0.0002; subject-level OLS p=1.2x10^-4, n=27, primary analysis given within-subject event clustering). A mixed-effects log-normal model with a random subject intercept confirms this while retaining full event-level power (coef=0.0250, p=1.2x10^-4, n=1,563 events), closely matching the subject-level OLS despite an unrelated estimation strategy. Error-detection latency also correlates with UPDRS-III (r=+0.660), confirming the dissociation is between variability and speed, not detection and correction per se. A log-normal accelerated failure time model yields a coefficient of 0.0255 (bootstrap 95% CI [0.0146, 0.0357]), a 2.6% increase per UPDRS-III point. After controlling the immediately thecoefficient attenuates to 0.0133 (p=3.1x10^-21),consistent w timingincrement above general bradykinesia. Results reacross both S2:r=+0.645), survive jackknife exclusion of every subject, andnatingfinger-tapping and mPower smartphone tapping (group AUC=0.836). cellent(ICC(2,1)=0.945, n=20).

Navin Bondade · 0 citations
#artificial intelligence Preprint Open access Sep 2026

Rate-Coding Bundle Memory: A Unified Model of Memory and Control for Symbolic Computation in the Brain

We propose a neurobiologically plausible model of cognition that combines the advantages of connectionist and symbolic systems, and that can explain a wide range of cognitive phenomena. This model, called Rate-Coding Bundle Memory (RCBM), is based on the Symbolic Subsystem Hypothesis, which posits that the brain implements a symbolic subsystem within its fundamentally connectionist nature. RCBM is a hybrid model that uses rate coding to represent symbols in a continuous space, and it uses a bundle memory system to store and retrieve these symbols. The model is capable of solving a wide range of cognitive phenomena, including one-shot learning, pattern separation, and the binding problem. We argue that RCBM provides a promising framework for understanding the nature of cognition, and that it can be used to develop more sophisticated models of cognition in the future.

Teun van Gils, Rowan P. Sommers, Markus Ostarek et al. · 0 citations
#machine learning Preprint Open access Sep 2026

Perforated Backpropagation: A Neuroscience Inspired Extension to Artificial Neural Networks

The neurons of artificial neural networks were originally invented when much less was known about biological neurons than is known today. Our work explores a modification to the core neuron unit to make it more parallel to a biological neuron. The modification is made with the knowledge that biological dendrites are not simply passive activation funnels, but also compute complex non-linear functions as they transmit activation to the cell body. The paper explores a novel system of ``perforated'' backpropagation empowering the artificial neurons of deep neural networks to achieve better performance coding for the same features they coded for in the original architecture. After an initial network training phase, additional ``dendrite'' nodes are added to the network and separately trained with a different objective: to correlate their output with the remaining error of the original neurons. The trained dendrites are then frozen, and the original neurons are further trained, now taking into account the additional error signals provided by the dendrites. The cycle of training the original neurons and then adding and training dendrites can be repeated several times until satisfactory performance is achieved. Our algorithm was successfully added to modern state-of-the-art PyTorch networks across multiple domains, improving upon original accuracies and allowing for significant model compression without a loss in accuracy.

Rorry Brenner, Laurent Itti · 0 citations
#machine learning Preprint Open access Aug 2026

Multiscale Community-Based Fingerprinting of Signed Functional Networks

Objective: Recent studies demonstrate that functional connectomes contain subject-specific signatures, or \textit{fingerprints}, that can identify individuals across repeated sessions and tasks. Existing methods mostly rely on edge-level features that are sensitive to noise, difficult to interpret, and limited in their ability to generalize across tasks and datasets. Methods: We propose a multiscale community-based functional connectome fingerprinting framework that characterizes each individual by the mesoscale structure of their functional networks. We introduce a signed multilayer community detection framework that incorporates both correlated and anti-correlated brain activity to identify subject-specific community structures across tasks and sessions. Graph-theoretic metrics are then computed from the resulting joint community structures to derive low-dimensional community-level fingerprint representations. Results: The proposed framework is evaluated on 810 healthy control subjects from the Human Connectome Project (HCP). The results show that community-based fingerprints provide a reliable and interpretable substrate for individualized brain characterization across sessions and tasks. Conclusion: Mesoscale community structure provides meaningful and discriminative subject-specific fingerprints. Significance: The proposed framework offers a promising foundation for precision neuroimaging and personalized neuroscience applications.

Sema Athamnah, Selin Aviyente · 0 citations
#machine learning Preprint Aug 2026

Leveraging a Foundation Model for the EEG-Based Diagnosis of Alzheimer's Disease

Biological heterogeneity in Alzheimer's Disease (AD) poses a critical diagnostic challenge, particularly for traditional linear methods that fail to capture non-linear neural dynamics. To address this, we propose a diagnostic framework utilizing the Large Brain Model (LaBraM), pretrained on over 2,500 hours of EEG data. By integrating these high-dimensional latent embeddings with a non-linear Random Forest classifier, our approach effectively isolates robust disease markers. Under a rigorous subject-independent 5-fold cross-validation protocol, the method achieves an ROC-AUC of 89.36% +/- 3.49%, PR AUC of 81.45% +/- 4.43%, and Balanced Accuracy of 82.44% +/- 4.34% in distinguishing dementia patients from healthy controls. Notably, this performance uses only 8-second EEG segments, surpassing traditional spectral baselines, including band-power and parameterized oscillatory features (FOOOF). Post-hoc occlusion analysis confirms the model captures clinically validated biomarkers, specifically occipital-frontal Alpha and Theta rhythm degradation. Additional neurophysiological alignment analysis demonstrated that higher LaBraM-predicted dementia probability significantly correlated with worse cognitive performance, greater clinical severity, increased theta and alpha relative power, and higher aperiodic exponent. These findings demonstrate that deep latent representations extract clinically relevant signatures from noisy signals, enabling precise, rapid, and data-efficient diagnosis.

Maggie Lin, Chung-Lin Hou, Tzyy-Ping Jung · 0 citations
#artificial intelligence Preprint Open access Aug 2026

Attention as Conditioning: What Classical Learning Theory Predicts About Linear Transformers

Attention is widely understood as an associative memory, but that description alone does not predict how the memory will behave. Predictive theories do exist, but in the literature on animal learning. We show that the state updates of the major linear-attention families are term-for-term identical with named models from a century of animal learning theory: linear attention implements Hebbian contiguity, DeltaNet implements Rescorla--Wagner error correction, and decay variants such as RetNet implement contiguity with a stimulus trace. This dictionary turns conditioning phenomena into testable statements about the in-context behavior of linear transformers, while distinguishing algebraic consequences from empirical measurements. Algebraically, it yields an exact closed form for Kamin blocking, verified in simulation to $<10^{-7}$ across five learning rates. Empirically, it predicts a dissociation that survives training on generic in-context association: error-correcting attention exhibits cue competition, whereas contiguity-based attention does not. A single state also has two capacity regimes, with measured scaling exponents of 1.22 for faithful retrieval and 1.89 for identification, consistent with linear and near-quadratic predictions. Across the full head grid, retrieval error is governed primarily by total state size rather than its partition across heads, indicating that heads provide capacity rather than redundant copies. We also prove no spontaneous recovery for the analyzed single-state recurrences under cue-orthogonal retention trials; with a never-presented-cue control and probes within the trained positional range, we likewise find no recovery in trained models. Finally, we introduce PH-attention, a Pearce--Hall-inspired rule with an explicit feature-indexed associability state that yields cue-dependent learning rates and is absent from the token-computed gates we compare.

Mu Qiao · 0 citations