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Author

Abdelmajid Omarjee

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Open access Sep 2026

Tuning the SMC: efficient simulation and the structure of ARGs

Sequentially Markovian Coalescent (SMC) models are a central element of contemporary population genetics, underlying many inferential methods. While the SMC has been shown to closely approximate the canonical Coalescent with Recombination (CwR) in terms of lowdimensional, two-locus summaries, its effects on the deeper...

Hossameldin Loay, Gertjan Bisschop, Derek Setter et al. · 0 citations
Review Open access Aug 2026

Variant calling in nonmodel organisms with snpArcher

A step-by-step protocol for snpArcher, a Snakemake-based workflow that takes raw sequencing reads and a reference genome as input and produces a filtered, joint-called VCF suitable for downstream population genomic analysis, is presented.

Cade Mirchandani, Abdelmajid Omarjee, G. Achaz et al. · 0 citations

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