Author

Alejandro Medaglia-Mata

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Open access Aug 2026

PUDU (pipeline for universal diversity unveiling): an accessible end-to-end workflow for taxonomic profiling and ecological visualization of environmental microbiomes across amplicon, shotgun, and long-read sequencing

PUDU (Pipeline for Universal Diversity Unveiling), a modular Snakemake workflow that supports amplicon (short-read 16S), shotgun metagenomics (WGS), and long-read 16S analyses from raw reads to standardized outputs for downstream microbial ecology, is presented.

Alejandro Medaglia-Mata, Pablo Rojas-Rodríguez, V. Bystrý et al. · Frontiers in Bioinformatics · 0 citations