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Author

Aleksey Komissarov

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Open access Aug 2026

The complete genome of a songbird.

Bird genomes are the smallest among amniotes; however, they remain challenging to assemble due to their structural complexity. This study presents a fully phased diploid telomere-to-telomere reference genome for the zebra finch (Taeniopygia guttata), a model organism for neuroscience and evolutionary genomics. Combinin...

G. Formenti, Nivesh Jain, Jack A. Medico et al. · 1 citation
Preprint Sep 2026

AI-Research Agents in the Wild. From GitHub and arXiv to Regularities and Gaps

AI-research agents, or autoresearch systems, combine language models with tools, search, evaluation, and iterative modification of research artifacts. Their public software ecology is hard to compare because repositories, papers, benchmarks, libraries, and companion artifacts are often counted as one population. We con...

Aleksey Komissarov, A. Ustyuzhanin · 0 citations
Jul 2026

Anatomy of a Sound Neural Reasoner: One-Shot Amortization, First-Pass Poisoning, and Search Inertness in Clue-Rich Completion

Neural solvers are built to deduce, branch, and revise intermediate states. The Lattice Deduction Transformer (LDT) appears to do exactly that. In clue-rich Sudoku, it does not: one forward pass commits essentially the entire grid (every blank cell on standard 6x6, 94-96% on augmented 9x9), turning the iterative solver...

Aleksey Komissarov · 0 citations

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