Author

Alex C. Soupir

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#explainable ai Open access Sep 2026

67 Foundation Model Embeddings Identify Spatial Restructuring Associated with Immunotherapy Treatment Derived from Hemoxylin and Eosin Images

Interestingly, these preliminary findings suggest that general-purpose models from whole slide images, focusing primarily in the stroma, can be used to extract tissue characteristics that may be otherwise unrealized from H&E images.

Alex C. Soupir, S. Eschrich, Mitchell T. Hayes et al. · The Oncologist · 0 citations

#software testing Open access Sep 2026

spatialMET: an open and scalable framework for spatial metabolomics analysis

SpatialMET is an open-source framework that provides an end-to-end workflow for MSI analysis that provides a unified platform for preprocessing, spatial domain detection, and visualization and is distributed as a Docker container for reproducible deployment.

Y. Mekonnen, Oscar E. Ospina, Vanessa Y. Rubio et al. · bioRxiv · 0 citations