Author

Alexandros Tzanakakis

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Open access Jul 2026

Accelerating inference in genomic and proteomic foundation models via speculative decoding

Abstract Motivation Genomic and protein foundation models (GFMs and PFMs) have demonstrated strong performance in learning the language of DNA and proteins, but their use in large-scale sequence generation is limited by the latency of autoregressive decoding. Because every token triggers a forward pass of a large Trans...

K. Provatas, Aris Karatzikos, Charalampos Koilakos et al. · Bioinform. · 0 citations

Open access Aug 2026

Calibration-free compression brings Evo 2 to its full million-token context on a single GPU

TurboQuant-Bio, an open toolkit that compresses Evo 2’s weights and attention cache to four bits without calibration data, and serves both through fused kernels, proves near-lossless across perplexity spanning the tree of life, genomic classification, splice-site prediction, gene completion and clinically relevant vari...

Michail Patsakis, Alexandros Tzanakakis, I. Georgakopoulos-Soares · bioRxiv · 0 citations