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Bjoern Peters

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Open access Jul 2026

What Do Generative Models Learn About Adaptive Immune Receptor Repertoires? A Benchmark Study

A suite of evaluation metrics tailored to AIRR sequence data are applied and a systematic comparison of popular generative model families proposed for the AIRR field, including variational autoencoders, long short-term memory networks, antibody language models, selection models, and simple statistical baselines are pre...

C. Wurtzen, Maria Mamica, C. Kanduri et al. · 0 citations
Open access Aug 2026

An Open Benchmark for Systems Vaccinology: Insights from the CMI-PB Challenges

Pre-existing antigen-specific antibody titers and baseline monocyte frequencies are identified as the most consistent predictors of post-vaccination immunity, highlighting the dominant role of individual immune setpoints.

Pramod Shinde, Lisa Willemsen, Jiyeun Lee et al. · 0 citations
Review Open access Aug 2026

The Cancer Epitope Database and Analysis Resource (CEDAR): current capabilities and future directions

CEDAR’s current capabilities, report on progress in curation, database development, and tool availability, and outline the opportunities and challenges ahead for expanding its scope and utility to the cancer research community are described.

Zeynep Koşaloğlu-Yalçın, Ibel Carri, Daniel Marrama et al. · 0 citations

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