Author

Boian Alexandrov

Los Alamos National Laboratory

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Open access Sep 2026

DNA breathing and shape encode distinct mechanisms of transcription factor binding

Interactions between transcription factors (TFs) and DNA play a key role in regulating gene expression. While these interactions are often viewed primarily as recognition of DNA sequence motifs, several studies have shown the limitation of this approach and highlighted the impact of physical properties of DNA. Pr...

Tsu-Pei Chiu, Wei-Yu Tang, W. Butt et al. · Bioinformatics Advances · 0 citations

Jul 2026

A Tensor-Train Discontinuous Galerkin Method for the Vlasov-Maxwell System

We present a tensor-train discontinuous Galerkin (TT-DG) formulation for the Vlasov--Maxwell system that combines a modal DG discretization with low-rank tensor representations of the phase-space solution and discrete operators. The formulation exploits the tensor-product structure of the DG discretization to perform q...

Rujeko Chinomona, D. Adak, W. Barham et al. · arXiv.org · 1 citation