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Bonnie Berger

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Open access Aug 2026

BatchRefiner: fast, significant improvement in batch integration of single-cell embeddings with ensemble refinement

This work introduces ensemble refinement for scRNA-seq and scATAC-seq embeddings, inspired by ensemble methods from statistical machine learning, and implements BatchRefiner, a fast post-processing tool to enhance batch integration.

Daniel E. Schäffer, Helen Kang, E. D. Aksu et al. · 0 citations

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