Perylenediimide (PDI) and its derivatives are widely studied for their photophysical and photochemical properties, making them promising candidates for photonic materials, organic semiconductors, and molecular qubits. However, the lack of control over their aggregation pathways and charge-transfer coupling severely limits their uses. Here, we report the synthesis of PDI-DNA bioconjugates as a new class of “programmable atom equivalents” (PAEs), in which a single PDI core is covalently linked to two DNA strands. Unlike conventional PAE superlattices formed by slow thermal annealing, the vapor-diffusion crystallization method enables the colloidal crystallization of PDI–DNA conjugates into large single-crystalline superlattices through cooperative DNA hybridization and PDI π–π stacking. The peripheral four sticky ends hybridize into a DNA framework, which serves as a scaffold, organizing the PDI cores into well-defined dimers, rather than disordered aggregates or micelles. The dimeric building units are rigid yet highly dynamic due to the intrinsic flexibility of the linkers, yielding superlattices with programmable PDI packing geometries and adaptiveness upon structural modifications. For most PDI crystals, PDI units stack continuously in one dimension to maximize interactions, which tend to hinder charge separation. Here, DNA not only encodes sequence-specific interactions but also sterically and electrostatically isolates PDI dimers as discrete photonic units into solid-state optically active materials. The structural tunability of the system can be readily adjusted by varying the PDI core or the linker length between the PDI core and the DNA shell. Notably, these superlattices exhibit photoinduced symmetry-breaking charge transfer distinct from that of monomers or micellar aggregates.
Cuizheng Zhang, Yi Xie, G. Mantel et al.· Journal of the American Chem...· 0 citations
DNA-functionalized colloidal nanoparticles assemble through flexible, nanoscale DNA hybridization interactions that limit atomic-level structural order. Here, we report a valence-centric strategy that enables DNA-bonded, protein single crystals with unconventional mechanical properties. An octameric enzyme, glutarate L-2-hydroxylase, was site- and number-selectively conjugated with eight self-complementary single-stranded DNA, yielding octavalent molecular bonds. The resulting conjugate assembled into the designed body-centered tetragonal crystals that diffracted to 1.42- to 2.61-angstrom resolution, with contacts mediated by B-form DNA helices spanning 17 to 25 angstroms. Increasing oligonucleotide length induces anisotropic lattice expansion while preserving atomic periodicity, even with partial DNA occupancy. Mechanistic studies suggest that the dynamic motion of unhybridized DNA facilitates crystallization, analogous to fluctuating electron clouds in atomic bonding. Compared with native protein crystals, DNA-hybridized crystals are 23-fold softer. These results challenge the assumption that flexibility is incompatible with structural order and establish a programmable framework for biomolecular crystallization and nanomaterials engineering with atomic precision.
Zhenyu Han, Chad A. Mirkin· Science Advances· 0 citations