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Author

D. Ingle

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Open access Aug 2026

Genomic epidemiology and emerging antimicrobial resistance profiles of Salmonella Paratyphi A in returning travellers to Australia

Enteric fever is endemic to many low- and middle-income countries (LMICs), particularly those in sub-Saharan Africa, South and South-East Asia. The causative agents are typhoidal serovars of Salmonella enterica, including Typhi (S. Typhi) and Paratyphi A (SPA). There are no vaccines currently licensed for SPA, leaving...

C. Connor, R. Wick, M. Taouk et al. · 0 citations
Open access Sep 2026

Accurate detection of metagenomic strain-level associations using average nucleotide identity with StrainSpy

Genetic variation among microbial strains of the same species can profoundly influence their phenotypes, ecological functions, and impacts on human health. Traditionally, the relative abundance of a species has been used to identify associations between the microbiome and disease. However, this approach overlooks intra...

S. Mallawaarachchi, Kshitij Tandon, Nikhil Rajan et al. · 0 citations

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