Author

Dajiang J. Liu

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Open access Aug 2026

NanoPrism: A Taxonomy-Guided Pipeline for Rapid Functional Profiling of Oxford Nanopore Long-Read Metagenomes

Background/Objectives: Oxford Nanopore sequencing produces long reads quickly, but most functional profiling tools were developed for short reads or rely on assembly pipelines that are computationally costly and sensitive to long-read error rates. We present NanoPrism, a taxonomy-guided pipeline for rapid functional pr...

Jiwoong Kim, Shuheng Gan, Harish Jawahar et al. · DNA · 0 citations

Open access Aug 2026

A generalized supervised contrastive learning framework for integrative multi-omics prediction models

MB-SupCon-cont improves prediction accuracy by incorporating a generalized contrastive loss function that defines similarity and dissimilarity for continuous responses using three distance-based weighting methods, and provides superior representation learning and improves data visualization in lower-dimensional spaces.

Sen Yang, Shidan Wang, Yiqing Wang et al. · Frontiers in microbiomes · 0 citations