Author

F. Vafaee

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Open access Aug 2026

Molecular Determinants of Functional Bacterial sRNA–mRNA Interactions Revealed by Integrating RNA Interactomes and Interpretable Machine Learning

Findings indicate that the regulatory fate of an sRNA–mRNA interaction is an emergent property of its biophysical context and protein-binding environment, rather than a direct consequence of physical pairing alone.

F. Safari, Daniel G. Mediati, Saleh Alquethamy et al. · bioRxiv · 0 citations

Preprint Jul 2026

Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation

This benchmark provides practical guidance for model selection and argues that future models should be judged by biological generalisation, interpretability and perturbation-grounded validity, not by scale or leaderboard performance alone.

S. Chen, Roxana Zahedi, Lucy Chhuo et al. · 0 citations