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Gina El Nesr

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Open access Aug 2026

De novo design of RNA pseudoknots with deep learning.

It is shown that intricate RNA structures can be generated with current deep learning tools through accurate de novo design of pseudoknot secondary structures, suggesting that some difficult RNA design tasks may be tractable without first solving RNA 3D structure prediction.

J. Townley, W. Kladwang, David Baker et al. · 1 citation
Open access Aug 2026

Learning millisecond protein dynamics from what is missing in NMR spectra.

Key dynamics directly linked to biological function, including enzyme catalysis and ligand binding, are particularly well predicted by Dyna-1, which parallels the findings that residues experiencing µs-ms exchange are more conserved.

Hannah K. Wayment-Steele, Gina El Nesr, Ramith Hettiarachchi et al. · 1 citation
Open access Aug 2026

makeshift: a lightweight software for accessing and analyzing NMR data and protein dynamics

Nuclear magnetic resonance (NMR) spectroscopy yields rich residue-level information on biomolecular dynamics and chemical environments, two frontiers for quantitative predictive methods in biochemistry. Decades of data are publicly archived in the Biological Magnetic Resonance Data Bank (BMRB)1, yet in practice, this i...

Gina El Nesr, Hannah K. Wayment-Steele · 0 citations

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