Author

Hong-Fei Lin

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Review Open access Oct 2026

PatientPheX: A Full-Text Biomedical Corpus for Patient-Specific Phenotype Information Extraction

Patient-specific phenotype information extraction identifiers and normalizes phenotype entities and links them with individual patients, supporting rare disease research and genotype-phenotype analysis. However, existing datasets rarely combine full-text biomedical content with detailed annotations of patients, phenoty...

Xuan-Yu Zhu, Ling Luo, Zhi-Jun Wang et al. · bioRxiv · 0 citations

#natural language process... Preprint Oct 2026

Enhancing Biomedical Named Entity Recognition via Multiple Programming Languages Instruction Tuning and Ensemble Method

Instruction tuning has become a common paradigm for applying large language models (LLMs) to biomedical named entity recognition (BioNER). However, existing instruction-tuning approaches still face two key challenges. First, conventional natural-language instructions typically serialize BioNER annotations as flat textu...

Song-Tao Li, Yi-Jia Zhang, Jian-Yuan Yuan et al. · 1 citation