Author

Huan-Ming Yang

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Open access Sep 2026

LucaCell: a sequence-centric foundation model for cross-species single-cell analysis

LucaCell, a sequence-centric foundation model that represents genes through pre-trained mRNA sequence embeddings rather than static gene annotations, is presented, showing that sequence-informed gene representation can improve the generalization of single-cell foundation models across species, data types, and predictiv...

Yan Sun, Yong He, Min-Si Ren et al. · bioRxiv · 0 citations

Open access Aug 2026

Genomic analysis of Echinococcus granulosus sensu stricto: genetic diversity and population structure.

BACKGROUND Cystic echinococcosis, caused by the tapeworm Echinococcus granulosus sensu stricto (ss), is a globally distributed, zoonotic disease that is recognised by WHO as a neglected tropical disease. Despite its clinical and economic importance, nuclear genomic variation in this parasite has not been systematically...

Liina Anijalg, Pasi K. Korhonen, Neil D. Young et al. · The Lancet Microbe · 0 citations