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J. Robbins

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Open access Jul 2026

MSstatsBioNet: Integrating Statistical Analyses with Prior Knowledge Biomolecular Networks for Quantitative Proteomics and Phosphoproteomics

This manuscript automates the integration of biological network databases with MSstatsBioNet, a Bioconductor package that integrates MSstats, a family of open-source packages for detecting differentially abundant proteins, and INDRA, a system that extracts biomolecular networks from biomedical literature using text min...

Anthony Wu, Devon Kohler, Pruthvi Prakash Navada et al. · 0 citations
Open access Aug 2026

Structure-free, site-resolved contrastive learning extends small-molecule discovery beyond the reach of structure-based modeling

Ptarmigan-1 is presented, a contrastive model that co-embeds the residues of a protein with candidate small molecules in a shared latent space, from sequence and two-dimensional chemistry alone, and without ever constructing a pose.

W. Fondrie, D. Canzani, L. Tatka et al. · 1 citation

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