Abstract Fungi play pivotal roles in terrestrial ecosystems as decomposers, pathogens and endophytes, yet their significance in marine environments is often understudied. Seagrasses, as globally distributed marine flowering plants, have critical ecological functions but knowledge about their associated fungal communiti...
C. Ettinger, Jonathan A. Eisen, J. Stajich· Microbial Genomics· 0 citations
This work introduces orthoSynAssign, a user-friendly, high-performance rewrite of the orthogroup refinement tool OrthoRefine, combining an intuitive Python interface with a core computing engine written in Rust, which provides a reliable and scalable framework for high-throughput phylogenomic workflows.
Cheng-Hung Tsai, Carolina G. Piña Páez, J. Stajich· bioRxiv· 0 citations
Giant viruses of the phylum Nucleocytoviricota have emerged as particularly notable due to their increasingly recognized impacts on eukaryotic genome evolution. Their origins are hypothesized to predate or coincide with the diversification of eukaryotes, and they have been detected in hosts that span the eukaryotic tre...
J. Myers, Frederik Schulz, Saleh Rahimlou et al.· PLoS Biology· 1 citation
Abstract As Earth’s principal reservoir of organic carbon and microbial biomass, the deep subsurface hosts microorganisms capable of mobilizing this once-sequestered carbon. Contrary to standard assumptions of eukaryotic scarcity, this study documents abundant fungal communities, ranging from 4.2 × 103 to 6.8 × 103 fun...
Quinn S Moon, Elliott P Barnhart, M. Varonka et al.· The ISME Journal· 0 citations
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