Author

James C. Kosmopoulos

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Open access Sep 2026

Shifts in vegetation impact estuary microbiomes

ABSTRACT Coastal wetlands, including mangrove-cordgrass mosaics, are among Earth’s most effective carbon stores sequestering >1 Pg C/year. Rapid sea level rise, warming, and storm intensification are now reshaping these habitats. Vegetation type influences root exudates, sediment redox profiles, and organic matter qual...

G. Aitolo, I. Rambo, R. Weisend et al. · mSystems · 0 citations

Open access Sep 2026

CheckAMG: Accurate Identification of Auxiliary Viral Genes with Genome-Language Models

Viruses shape microbial metabolism through auxiliary viral genes (AVGs) that reprogram host metabolism, physiology, and gene regulation during infection. Identifying AVGs is complicated by ambiguous viral versus cellular assignment, inconsistent curation, and reliance on sequence homology that misses divergent function...

James C. Kosmopoulos, Cody Martin, J. Wainaina et al. · bioRxiv · 0 citations