Author

Jiang Bian

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Open access Sep 2026

Corpusome, a cross-body-site human microbiome corpus for representation learning

Machine-learning models of the human microbiome are trained mostly on stool samples from single cohorts, limiting cross-body-site representation and cross-study generalization. Progress is constrained less by algorithms than by the absence of a harmonized multi-body-site corpus carrying the technical metadata needed to...

Hao Xuan, Yu Huang, Jiang Bian · bioRxiv · 0 citations

Open access Sep 2026

ShadoNet: A Cell Detection and Classification Framework for Ki-67 Pathology Images.

MOTIVATION Accurate detection and classification of individual cells are essential for quantitative histopathology. In Ki-67-based tumor grading, the clinically relevant index is calculated from immunopositive and immunonegative tumor cells, while non-tumor cells should be excluded. This is challenging because Ki-67-st...

Mahsa Ghasemi, Fuyong Xing, Toby C. Cornish et al. · Bioinformatics · 0 citations

Open access Sep 2026

scPyviewer: a Python-native interactive viewer from AnnData single-cell data

ScPyviewer is a web-based viewer that ingests AnnData objects directly and reproduces the core interaction patterns of the incumbent R Shiny tools without leaving the Python stack and uniquely offers native AnnData ingestion with no Seurat conversion, and cross-dataset comparison over shared genes and matched cell-type...

Hao Xuan, Yu Huang, Jiang Bian et al. · bioRxiv · 0 citations