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Jiaqi Li

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Jul 2026

Sequence-based modeling of plant epigenomes reveals cell-type-specific cis-regulatory grammar

PEAgent provides a foundational resource for decoding cell-type-specific plant cis-regulatory logic and interpreting noncoding variation in plants, and distinguishes grass-conserved from lineage-specific regulatory sequences better than sequence conservation scores alone.

Jie Yao, Jiaqi Li, Xuan Zhang et al. · 0 citations
Open access Jul 2026

Hidden genetic diversity in 320 nearly-complete East Asian genome assemblies

East Asian populations, representing over 20% of the global population, remain critically underrepresented in human genomic studies, limiting our understanding of population-stratified genetic variation and its implications for health and disease. Here we present the first phase of the Asian Pan-Genome project (APG), c...

Dongya Wu, Chentao Yang, Quanyu Chen et al. · 2 citations
Open access Aug 2026

DeepGeSeq: deep learning library for genomic sequence modeling and analysis

DeepGeSeq is introduced, a user-friendly Deep-learning library tailored for Genomic Sequence modeling and analysis that bridges the gap between computational complexity and biological discovery, providing an accessible resource that facilitates the development of deep learning methods in genomics research.

Jiaqi Li · 0 citations

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