MOSHPIT: Accessible, reproducible metagenome data science on the QIIME 2 framework.
This work introduces MOSHPIT (MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking), software built on the QIIME 2/rachis framework (Q2F) that integrates best-in-class CAMI II- and LEMMI-validated metagenome tools with robust provenance tracking and multiple user interfaces, enabling streamlined, re...