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Author

Koki Tsuyuzaki

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Open access Sep 2026

A transcription factor regulatory atlas for activity inference and perturbation prediction

Abstract Inferring transcription factor (TF) activity from transcriptomes and predicting transcriptome-wide responses to TF perturbations remain challenging, in part because available TF–mRNA resources often face a trade-off between precision and coverage and typically lack signed regulatory information. Here, we prese...

Hikaru Sugimoto, Koki Tsuyuzaki, Zhao-Nan Zou et al. · 0 citations
Review Open access Sep 2026

Ten quick tips for spatial transcriptomics analysis

Ten quick tips spanning the entire ST research workflow are presented: whether ST suits a given biological question, how to select a platform aligned with study objectives, how to understand and process ST data, and which software tools to employ for analysis and visualization.

Nagomi Kurogi, Koki Shimbara, Tatsuya Koreeda et al. · 0 citations

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