Speed breeding (SB) accelerates generation turnover, but the small seed quantities produced during rapid generation advance remain a bottleneck. Here, we quantify intensive off-season seed multiplication as a scale-up stage of the SB pipeline. Using spring barley, we tested two lighting systems, high-pressure sodium (H...
A. G. Marenkova, V. Igonin, A. Kocheshkova et al.· Frontiers in Plant Science· 0 citations
Accurate germline variant calling in non-model and polyploid organisms remains challenging due to sequencing errors, genomic complexity, and caller-specific biases. Existing ensemble methods of variant calling are constrained by species-specific training, limited portability, or an inability to process multiple samples...
This work presents REAPER (Repeatome Extended Analysis Pipeline—Execution and Reporting), a project-centric workflow layer that couples a modular Snakemake pipeline with a Python project manager to enforce a stable on-disk layout and configuration-driven execution for single-sample and comparative repeatome analyses.
D. Ulyanov, A. I. Yurkina, Viktoria Voronezhskaya et al.· Frontiers in Plant Science· 0 citations
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