Author

N. Bokulich

3 papers indexed here

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Open access Sep 2026

A standardized collection of human stool and fermented food microbiomes from the Launch Phase of the Microbiota Vault Initiative

The human gut microbiome and traditional food systems are threatened by lifestyle changes linked with industrialization. The gut microbiome plays a key role in human health, yet publicly available microbiome data lack global representation. Similarly, while fermented foods serve as an important nutritional and cultur...

Anton Lavrinienko, Vanni Benvenga, Diana Albertos Torres et al. · Scientific Data · 0 citations

Open access Sep 2026

MOSHPIT: Accessible, reproducible metagenome data science on the QIIME 2 framework.

This work introduces MOSHPIT (MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking), software built on the QIIME 2/rachis framework (Q2F) that integrates best-in-class CAMI II- and LEMMI-validated metagenome tools with robust provenance tracking and multiple user interfaces, enabling streamlined, re...

M. Ziemski, Liz Gehret, Anthony Simard et al. · Cell Genomics · 0 citations

Open access Aug 2026

Decoding the microbiota of borş: multifunctional potential of a traditional Romanian beverage fermentation

Overall, Romanian borş harbored a lactic acid bacteria-dominated core microbiome with a significant functional diversity, underscored its potential as a rich source of functional and technologically important strains for application in starter and protective culture development.

S. Grosu-Tudor, Annina R. Meyer, Iulia-Roxana Angelescu et al. · bioRxiv · 0 citations