Author

Nan Qin

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Review Sep 2026

Deep Learning in Enzyme Function Prediction and Novel Enzyme Discovery

This review summarizes recent progress with an emphasis on benchmark design rather than reported scores alone, and compares representative methods by input modality, training data, split strategy, leakage control, evaluation metric, and validation evidence.

Rong-Sheng Gao, You-Meng Liu, Cheng-Ye Duan et al. · ACS Synthetic Biology · 0 citations

Open access Aug 2026

A Novel Unsupervised Learning Model with Bayesian Hyperparameter Optimization for Predicting Substrates of Promiscuous Enzymes

Promiscuous enzymes catalyze multiple biochemical reactions, but predicting their substrate profiles remains challenging because annotations are incomplete, reliable negative labels are scarce, and enzyme–substrate relationships are inherently multilabel. Here, we present PreSEPM (Predictive Substrate Explorer for Prom...

Rong-Sheng Gao, Cheng-Ye Duan, Nan Qin et al. · ACS Omega · 0 citations