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Review Open access Sep 2026

Bioimage management and analysis in Galaxy: Tools, workflows, training, and community practices.

Image analysis in the life sciences is constrained by fragmented software ecosystems, heterogeneous data formats, and limited reproducibility. These barriers hinder the reuse of image analysis methods and the sustainability of tools. In this article, we describe how the Galaxy platform enables FAIR (Findable, Accessibl...

Leonid Kostrykin, R. Massei, Diana Chiang et al. · 0 citations
Open access Sep 2026

EISCA and EISTA: Full-Spectrum Pipelines for Single-Cell and Spatial Transcriptomics Analysis

Single-cell and spatial transcriptomics are transforming our understanding of cellular heterogeneity and tissue organization, yet their analytical complexity remains a major bottleneck. Here, we present EISCA and EISTA, two standardized, end-to-end pipelines for single-cell RNA-seq and imaging-based spatial transcripto...

Hui-Hai Wu, Ashleigh Lister, Iain C. Macaulay et al. · 0 citations

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