Large language model (LLM) agents are increasingly used to modernize the legacy Fortran underlying production scientific software, but validation of these transformations emphasizes nominal executions and may not test whether a modernization preserves the original code's response to faults, perturbations, and reduced precision. We present a differential fault-injection validation method: a harness instruments the shared self-consistent-field driver of GAMESS at twelve sites and applies identical, deterministic faults to the original and LLM-modernized implementations, isolating the converted integral kernels. Across more than 2,200 runs, transient-fault absorption costs match a contraction-based model (predicted slopes 0.74 and 1.49 iterations per bit; measured 0.82 and 1.50), persistent perturbations halve final-energy error per additional bit, and the campaigns expose phase-dependent parallel deadlocks and false convergence under reduced precision. The original and modernized kernels agree in all 200 paired injections, and a measurement-guided synchronization change composes with the modernization, matching in all 40 pairs.
Evan Coleman, Yuzhong Shen, M. Sosonkina et al.· 0 citations
Uni-XAS is presented, a unified benchmark and learning framework that reframes bidirectional XAS modeling as a cross-modal alignment and conditional generation problem, and introduces Permutation-Rectified Flow Matching, which integrates type-wise optimal transport into a continuous generative flow to provide a principled solution to ligand permutation ambiguity without relying on heavy high-order equivariant architectures.
Suyang Zhong, Yuhao Zhao, Boying Huang et al.· 0 citations