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Surprisingly, id1- te1- plants exhibited a synergistic floral delay, producing ∼90 leaves before inflorescence production, raising the hypothesis that meristem leaf primordia cessation underpins maize flowering.
A practical, solution-oriented synthesis of current bottlenecks across experimental and computational pipelines is provided, emerging strategies to overcome these limitations are highlighted, and a roadmap for community-driven protocol sharing, benchmarking, and integration across spatial and multi-omics modalities is...
PEAgent provides a foundational resource for decoding cell-type-specific plant cis-regulatory logic and interpreting noncoding variation in plants, and distinguishes grass-conserved from lineage-specific regulatory sequences better than sequence conservation scores alone.
Easy-Multiome, a streamlined single-cell multiomic workflow that integrates a single in situ reverse transcription step into the standard droplet-based scATAC-seq protocol, is presented, demonstrating that robust and efficient joint profiling of plant gene expression and chromatin accessibility while requiring only min...
ContextAware Significance of Cross-gene Attribution for Discovering Elements (CASCADE) is introduced, a positionspecific statistical framework for identifying model-derived candidate regulatory elements from in silico saturation mutagenesis and shifts motif recovery from downstream of the transcription start site towar...
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