Tetrapyrrole biosynthesis is an absolute essential metabolic pathway in plants that predominantly gives rise to chlorophyll, heme, and phytochromobilin. Dysregulation of tetrapyrrole biosynthesis severely impairs plant growth and development when heme and chlorophyll synthesis are not adjusted to the needs in the respective plant organ and when excessive accumulation of light-absorbing tetrapyrrole intermediates cause oxidative damage. However, how chlorophyll and heme synthesis are properly balanced during early development of greening seedlings remains largely elusive. In this study, we performed a suppressor screen on the photosensitive Arabidopsis thaliana pif1 pif3 (for phytochrome-interacting factors) double mutant, which exhibits excessive singlet oxygen (1O₂) accumulation, and identified four different point mutants of the GENOMES UNCOUPLED 3 (GUN3, also known as HY2) gene encoding phytochromobilin synthase. Further genetic analysis revealed that either mutation of GUN3 or also GUN2 (encoding heme oxygenase, also known as HY1/HO1), but not FC1 (encoding ferrochelatase), rescues the cell death phenotype of pif1 pif3, lowers 1O₂ levels, and suppresses 1O₂-responsive gene expression. Furthermore, gun2 and gun3 mutations lead to heme-mediated feedback inhibition of 5-aminolevulinic acid synthesis and consequently reduced protochlorophyllide accumulation in the pif1 pif3 background. Notably, GUN2 and GUN3 physically interact with GUN4, while their mutations markedly correspond with decreased content of GUN4 and GUN5, which are involved in Mg chelation at the beginning of chlorophyll biosynthesis. Our studies point to an important regulatory role of GUN2 and GUN3 for the mutual link of heme and chlorophyll synthesis.
Huafan Zhu, Yuhong Li, Wenqiang Yang et al.· Plant and Cell Physiology· 0 citations
Abstract Photosynthetic efficiency, a pivotal determinant of crop yield, is governed by chloroplast development—a process that remains poorly understood in polyploid crops. Using tetraploid oilseed rape (Brassica napus) as a model, we phenotypically characterized chloroplast development under light induction and performed a high-resolution, multi-omics analysis of this process. Through the integration of time-series transcriptome, proteome, and post-translational modification (PTM) data—encompassing acetylation, phosphorylation, and ubiquitylation—we reveal a multi-layered regulatory network coordinating chloroplast maturation. A core, sequential transcription factor cascade orchestrates the temporal program, which is finely modulated by crosstalk between alternative splicing and PTMs. PTMs further fine-tune the activity of proteins within essential photosynthetic pathways. We also demonstrate differential subfunctionalization of homeologous gene pairs, a polyploid-specific strategy that enhances regulatory flexibility and robustness. Our findings establish a molecular map of chloroplast development, elucidating how transcriptional, post-transcriptional, and post-translational layers may contribute to efficient plastid maturation. This study also identifies upstream regulators, particularly within the photosystem and chlorophyll biosynthesis pathways, as potential candidates for functional validation to assess their roles in improving photosynthetic performance. Collectively, our findings provide a resource for future research in chloroplast biology, photosynthesis, polyploid biology, and comparative-omics studies.