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Author

Ryan Cook

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Open access Aug 2026

Distinct gut viral communities across life stages in dairy cattle

Ruminant gut microbial communities influence host health, productivity, and methane emissions, yet viral communities across life stages remain uncharacterized. Whilst bacteriophages shape microbial communities in many ecosystems, their role across dairy cattle life stages is unknown. We characterized DNA viral co...

Ryan Cook, A. Blanchard, Caleb Marsh et al. · 0 citations
Open access Aug 2026

Defining the ESKAPE pathogen prophage repertoire with PHORAGER

PHORAGER (Prophage Hunting, vOtu Retrieval, Annotation and Genomic ExploRation), a scalable Nextflow pipeline for the standardised identification and quality assessment of prophages from bacterial genomes, validated using 30,824 publicly available ESKAPE pathogen genomes.

Xena Dyball, Alise J. Ponsero, James A. D. Docherty et al. · 0 citations

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