capripoxvirus-pangenome
Reproducible Nextflow DSL2 pipeline accompanying the manuscript "Pangenomic Evaluation of Host Adaptation and Recombination-Mediated Emergence in Capripoxviruses". Full workflow from read QC through the polarised McDonald-Kreitman test 13 process modules, 5 subworkflows, conda and container profiles, SLURM config Version-pinned software environments matching the published analysis Original analysis scripts preserved verbatim under bin/legacy/ Continuous integration verifies the workflow wiring on every commit Validation targets for a full reproduction run are listed in docs/scripts.md.
Raana Tabashiri, Sajad Rashidi Monfared, Ali Akbar Masoudi
· Zenodo (CERN European Organi... · 0 citations