Flavonoids are central to abiotic stress responses, yet the specific signaling roles and evolutionary dynamics of flavonoid biosynthetic intermediates in crop drought adaptation remain elusive. Here, we demonstrate that dihydrokaempferol (DHK) and dihydroquercetin (DHQ), specific intermediate products of the soybean flavanone 3-hydroxylases GmF3H1/2, function as potent signaling molecules that mitigate drought stress. Exogenous DHK/DHQ promoted ABA-dependent stomatal closure and enhanced drought tolerance across diverse dicot species including soybean and tobacco, highlighting a broadly conserved stress-mitigating signaling mechanism. CRISPR/Cas9-generated gmf3hs double mutants exhibited severe drought hypersensitivity due to compromised redox homeostasis and defective stomatal regulation, which could be specifically functionally rescued by DHK/DHQ application. Furthermore, the loss of GmF3H triggered a distinct reproductive trade-off under stress, leading to increased pod initiation but severe filling defects. Multi-omics network analysis revealed extensive rewiring of broader stress-responsive pathways and identified upstream transcription factors, among which GmPHL11 directly binds to and activates the GmF3H1 promoter, and overexpression of GmPHL11 promoted DHK accumulation and enhanced drought stress tolerance in soybean hairy roots. Finally, population genomic analyses demonstrated that the GmF3H1H1 haplotype, which confers superior enzymatic activity and robust root growth under drought stress, might underwent positive selection during soybean domestication. Collectively, our findings redefine the role of GmF3H-derived specific intermediates as potent signaling molecules, providing comprehensive mechanistic and evolutionary insights into flavonoid-mediated drought resilience, developmental trade-offs, and molecular breeding in crops.
Yan Lin, Cong Li, Bai-Hong Zhang et al.· Plant Physiology· 0 citations
Climate change intensifies abiotic stresses that limit crop productivity, requiring innovative strategies to enhance resilience without compromising sustainability. Nanoparticles (NPs) have emerged as potential modulators of plant stress responses by influencing molecular regulation, physiological adaptation, and stress resilience. However, current evidence remains fragmented because studies are dispersed across different NP types, crop species, abiotic stress conditions, and omics platforms, with most investigations conducted under controlled experimental conditions and few integrating molecular responses with agronomic performance. In this study, we synthesize evidence from plant physiology, omics (including transcriptomics, proteomics, metabolomics, and soil microbiome analyses), and agronomic studies to provide an integrated conceptual synthesis linking NPs' physicochemical properties with multi-omics reprogramming and yield-related outcomes under abiotic stress. Collectively, the available evidence indicates that NP size, surface charge, composition, and redox activity strongly influence uptake behavior, intracellular interactions, and signaling intensity, thereby shaping coordinated system-level responses rather than isolated modifications in individual genes, proteins, or metabolites. Across abiotic stresses, NPs modulate stress responses through effects on redox homeostasis, hormonal signaling, ion transport, metabolic flexibility, and rhizosphere interactions. However, their effects vary with NP properties, application conditions, plant species, and stress environments, ranging from stress mitigation to growth inhibition. These responses can improve photosynthetic stability, reproductive performance, and resource allocation, contributing to partial recovery of growth and yield under certain stress conditions. Conversely, excessive or poorly controlled NP exposure disrupts redox balance and growth, underscoring the importance of narrow efficacy windows. We further identify key limitations in the existing literature, including dose and crop specificity, short-term experimental designs, limited field validation, and limited mechanistic linkage between multi-omics responses and agronomic performance, highlighting the need for synchronized multi-omics validation. We contend that future advancements require a transition from proof-of-concept demonstrations to predictive, system-level approaches that integrate multi-omics with developmental stage, environmental context, and yield stability. By reframing NPs as context-dependent modulators of stress resilience rather than universal growth enhancers, this review provides a conceptual foundation for their responsible evaluation and potential application in climate-resilient agriculture.
Rayyan Khan, Nisar Uddin, A. Srivastava et al.· Microbiology Research· 0 citations
