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Author

Shu-Qin Zhang

2 papers indexed here

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Open access Oct 2026

SORT disentangles multilevel gene programs across heterogeneous spatial transcriptomic atlases

Understanding how transcriptional programs are organized across biological contexts is essential for deciphering tissue development, disease progression, and species-specific adaptations. Spatial transcriptomic atlases spanning patients, developmental stages, and species provide an opportunity to resolve gene expressio...

Lei Zhang, Li-Min Li, Shu-Qin Zhang · 0 citations
Open access Oct 2026

DeSPA uncovers genes with cross-state spatial pattern remodeling and coordinated spatial programs across multi-slice spatial transcriptomics atlases

Spatial transcriptomics increasingly generates multi-slice atlases spanning developmental, regenerative, and disease-associated states. Identifying genes with spatial pattern remodeling across these states is essential for understanding tissue reorganization and the underlying gene programs, yet few existing methods sy...

Hao Wen, Qun-Lun Shen, Zhi-Yuan Yuan et al. · 0 citations

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