Author

Siavash Mirarab

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Open access Oct 2026

DipSkmer: Reference-free population genomics with diploid genome skims.

Ecologists and conservation biologists rely on genetic diversity as a key essential biodiversity variable (EBV) used to track population health and dynamics, and utilize the population-scaled mutation parameter θ as a key metric of diversity. While whole-genome-sequencing (wgs) is increasingly affordable, it will be co...

Eduardo Charvel, H. J. Alves Monteiro, S. Mirarab et al. · PLoS Computational Biology · 0 citations

Open access Aug 2026

ROADIES-XP: GPU Acceleration and Phylogenetic Update Improve Scalability of Species Tree Inference from Raw Genomic Assemblies

Most large-scale whole-genome sequencing projects release assemblies incrementally in phases. However, existing phylogenomic workflows typically assume a static set of genomic sequences, thus requiring a full de novo species tree reconstruction whenever new genomes need to be incorporated into the analysis, which is bo...

Anshu Gupta, Wen-Chieh Lo, Siavash Mirarab et al. · bioRxiv · 0 citations