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Author

Solène Pety

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Preprint Sep 2026

Leveraging hologenomic data for phenotypic prediction: potential and pitfalls

The results provide a structured framework to interrogate when and how integrating microbiota may enhance phenotypic prediction in breeding applications and show that the added value of hologenomic, compared to genomic prediction, is highly context dependent.

Solène Pety, Ingrid David, Andrea Rau et al. · 0 citations
#software testing Open access Sep 2026

From code to natural language: MErlin – a multi-omics toolkit for bacterial epigenomics delivered as Claude agent skill

MErlin (Methylation-driven Expression & Regulation Linkage in Interacting Nuclear-domains), a multi-omics toolkit comprising seventeen composable modules, from basecalled modBAM files to ranked gene-level evidence and a self-contained HTML report is presented.

Iacopo Passeri, Solène Pety, Michele Giovannini et al. · 0 citations

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