Author

Sooyoung Cha

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Open access Oct 2026

Systematic exploration of predicted quaternary structures within pandemic-relevant viral proteomes

Mechanistic understanding of viral protein-protein interactions enables global health security and pandemic preparedness, yet experimental characterisation remains difficult, costly, and often restricted to specialised laboratories. Here, we describe an in silico campaign using AlphaFold2 and AlphaFold-Multimer to pred...

Yew-On Han, Riya Narain, Razan Abbara et al. · bioRxiv · 0 citations

Open access Sep 2026

Foldseek-Interface reveals a protein interface universe far from complete

Foldseek-Interface is presented, a method that converts 3D interface structures into searchable sequences to enable fast alignment and clustering of protein interaction interfaces and matches the accuracy of state-of-the-art tools while running up to 230 times faster.

J. M. Strom, Sooyoung Cha, R. Kim et al. · bioRxiv · 2 citations