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Author

Stephen A. Fisher

2 papers indexed here

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Automated Standardization of Legacy Biomedical Metadata Using an Ontology-Constrained LLM Agent

ARMS is presented, a tool-augmented LLM agent that retrieves complete CEDAR metadata templates and dynamically queries authoritative biomedical terminology services at execution time and shows that access to appropriate metadata standards can substantially improve LLM-based standardization of legacy metadata.

J. Hardi, Martin J. O'Connor, Marcos Martínez Romero et al. · 1 citation
Open access Aug 2026

Bridging Biomedical Atlas Ecosystem: Cross-Atlas Alignment And Scalable Tissue Specimen Registration

Two approaches to scale up HRA construction are presented: projecting data across biomedical reference atlas systems and using millitomes to bulk register tissue blocks into a reference organ using the AutoMated Alignment and Projection pipeline.

Yashvardhan Jain, Bhargav Desai, Danial Qaurooni et al. · 0 citations

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