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T. de Oliveira

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Open access Oct 2026

Spatiotemporal disease suitability prediction for Oropouche virus and the role of vectors across the Americas.

Oropouche virus (OROV) is an emerging arbovirus with increasing outbreaks in South America, yet its environmental drivers and potential range remain poorly understood. Using ecological niche modeling (ENM) with random forests, we assessed the environmental suitability of OROV and its primary vector, Culicoides paraensi...

J. Poongavanan, Marcel Dunaiski, Graeme Dor et al. · 0 citations
Review Open access Aug 2026

Wastewater Metagenomic Surveillance Reveals Socioeconomic Patterns of Pathogen Diversity and Antimicrobial Resistance in Nairobi, Kenya

Background: Wastewater and Environmental Surveillance (WES) has become a useful public health tool as an early-warning system revealing emergence/re-emergence of pathogenic diseases and spread of antimicrobial resistance (AMR). We characterized the taxonomic composition, relative abundance, and antibiotic resistance ge...

Bernard Mware, Gilbert Kibet-Rono, K. Mwangi et al. · 0 citations
Open access Aug 2026

Anniemap: Vector Search for Viral Short Read Alignment

By measuring vector similarity rather than relying on long exact seed matches, Anniemap provides greater robustness to sequencing errors and genomic mutations, particularly advantageous for viral genomes, where substantial sequence divergence is common.

D. J. van Zyl, H. Tegally, C. Baxter et al. · 0 citations

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