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Author

Tine Claeys

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Open access Aug 2026

OmicsFM brings proteomics into the foundation model era

OmicsFM, a modality-agnostic transformer pretrained through masked abundance reconstruction on an unprecedented proteomics data corpus of 48,837 quality-filtered proteomics profiles from 1,397 reprocessed PRIDE projects, firmly establishes the possibility of training highly performant proteomics-based foundation models...

Sander Heyndrickx, R. Gabriels, Harikrishnan Ramadasan et al. · 1 citation
Open access Aug 2026

Discovery of non-canonical proteins through modification-aware proteogenomics

The potential for open modification searching to correct potential mistakes in non-canonical proteins detection by preventing modified canonical peptides or variants from being incorrectly identified as non-canonical peptides is shown.

V. Vasylieva, Enrico Massignani, Tine Claeys et al. · 0 citations

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