AI Networking Cookbook: Practical recipes for AI-assisted network automation and development
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Enhancements & fixes Removed fixed nextflow version for test download Fix FASTA file name for test_full profile Upgraded to the nf-core template v4.1.0 Slack / Teams functionality now moved to Nextflow plugins (nf-slack, nf-teams) Add check for BAM/CRAM headers in nf-test Preserve PG lines from original BAM/CRAM files...
Enhancements & fixes SNPio 1.6.0–1.7.6 counted each homozygote four times when computing minor allele frequencies (btmartin721/SNPio#51). As a result, --min_maf removed loci whose MAF passes the threshold when the minor allele is mostly in heterozygotes. On the test data, 1.0.0 kept 915 of the 1,130 loci that pass the...
Enhancements & fixes SNPio 1.6.0–1.7.6 counted each homozygote four times when computing minor allele frequencies (btmartin721/SNPio#51). As a result, --min_maf removed loci whose MAF passes the threshold when the minor allele is mostly in heterozygotes. On the test data, 1.0.0 kept 915 of the 1,130 loci that pass the...
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