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U. Zulfiqar

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Review Open access Jul 2026

Salinity signaling networks in wheat: crosstalk among Ca2⁺, ROS, phytohormones, and metabolic signals in salt adaptation

Abstract Soil salinity limits wheat productivity by disrupting water uptake, Na⁺/K⁺ homeostasis, photosynthesis, reproductive development, and grain filling. Although wheat salinity tolerance is often discussed in terms of individual traits such as Na⁺ exclusion, antioxidant defense, osmolyte accumulation, or abscisic acid signaling, these responses operate as interconnected signaling networks. This review reframes wheat salinity adaptation as a crosstalk-driven process linking early root perception with whole-plant acclimation and yield-related outcomes. At the root-soil interface, salinity rapidly lowers external water potential, alters membrane potential, disturbs ion fluxes, and induces early Ca2⁺, reactive oxygen species (ROS), pH, nitric oxide, electrical, and phosphorylation signals. Ca2⁺ sensors and decoders, including CaM/CMLs, CDPKs, and CBL-CIPK modules, connect these early signals with ROS regulation, ion-transporter activity, kinase cascades, and transcriptional reprogramming. ABA integrates osmotic stress with stomatal closure, hydraulic adjustment, compatible-solute accumulation, and water-use regulation, whereas additional hormonal and metabolic signals shape root architecture, growth restraint, senescence, source-sink balance, and reproductive protection. Wheat-specific evidence strongly supports the importance of HKT1;5-mediated Na⁺ retrieval, SOS-like ion regulation, K⁺ retention, antioxidant capacity, ABA-associated water regulation, osmotic adjustment, and genotype-dependent transcriptional responses. However, several important signaling models, including precise Ca2⁺ signatures, real-time Ca2⁺-ROS feedback dynamics, guard-cell ABA-ROS-Ca2⁺ signaling, systemic Ca2⁺/ROS waves, and salinity-specific sugar-redox-hormone control of grain filling, remain incompletely validated in wheat. By distinguishing wheat-supported mechanisms from conserved model-plant frameworks, this review identifies key signaling hubs and physiological trade-offs that may guide breeding, genome editing, priming, and agronomic strategies for improving wheat performance under saline environments.

Hakim Zamir, Daud Ali Shah, F. Rauf et al. · 1 citation
Review Open access Jul 2026

Functional Genomics of Sulfur Metabolism in Rice: Insights From Transgenic and MicroRNA‐Based Strategies

Evidence from functional genomics studies demonstrates that sulfur metabolism is closely integrated with redox signaling, stress tolerance, and plant immunity, which supports a view of sulfur metabolism as a dynamic regulatory network rather than a linear nutrient‐assimilation pathway.

F. Rauf, Hakim Zamir, Hussam Ahmad et al. · 0 citations
Review Jul 2026

CRISPR-enabled functional genomics for bolstering plant tolerance to abiotic and biotic stress; a comprehensive review

This review systematically examines how CRISPR-Cas9 enables targeted engineering of stress tolerance in major crops through gene knockout and knock-in strategies, and highlights emerging synergies with functional genomics, multi-omics integration, and high-throughput phenotyping to accelerate target discovery and validation.

T. Khan, A. A. Abro, U. Zulfiqar et al. · 0 citations
Review Aug 2026

Sulfur Homeostasis in Rice as a Dynamic Regulatory Network: Functional Genomics, Metabolic Crosstalk, and miR395-Mediated Control.

It is proposed that sulfur metabolism should be viewed as a dynamic resource allocation network rather than a linear assimilation pathway, to help identify regulatory variants that improve sulfur-use efficiency, stress resilience, immunity, and grain quality without compromising yield stability.

F. Rauf, Hakim Zamir, Hussam Ahmad et al. · 0 citations