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Sponsored Artificial Intelligence: A Modern Approach, Global Edition Artificial Intelligence: A Modern Approach, Global Edition

Author

Wenkai Wang

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Open access Oct 2026

trFlow: ultrafast all-atom protein conformational ensemble generation via conditional flow matching

Generating diverse, all-atom protein conformations remains challenging, especially for recovering alternative functional states and modeling conformational ensembles. We present trFlow, an ultrafast approach for generating all-atom conformations using geometry-guided flow matching. trFlow leverages three core innovatio...

Chen-Xiao Xiang, Kai-Long Zhao, Zhen-Ling Peng et al. · 0 citations
Open access Jul 2026

COACH-D 2.0: A Server for Template-based Modeling of Protein-ligand Interactions.

COACH-D 2.0 is introduced, a substantially enhanced template-based method for predicting protein-ligand binding sites and features three key advances: integration of multimeric templates from Q-BioLiP into the authors' in-house library, a new multimeric structure processing module enabling binding site prediction for p...

Xiao-Yu An, Hong Wei, Wenkai Wang et al. · 0 citations

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