Structure-sensitive properties (SSPs), including activity cliffs and chirality-dependent properties, challenge molecular machine learning because small structural perturbations can cause abrupt property changes and invalidate smooth structure–property assumptions. Here, we present CAMF (Chirality- and Activity-cliff-aw...
Shaolong Lin, Si-Long Zhai, Shi-Hang Wang et al.· Chemical Science· 0 citations
This work proposes MF‐Net, a unified hierarchical multiscale fusion framework that integrates sequence‐, atomic‐, and fragment‐level representations to model drug–target interactions across complementary scales and demonstrates strong early enrichment across multiple virtual screening datasets.
Shuo Liu, Xiang Zhang, Haixia Feng et al.· Advancement of science· 0 citations
By delineating how physics-based priors synergize with data-driven representation learning, this review provides a comprehensive roadmap for generating physically plausible and thermodynamically stable therapeutics, ultimately accelerating the transition of computationally designed molecules from in silico blueprints t...
Hao-Bo Xie, Hao Wang, Xiao-Jun Yao et al.· The Innovation Drug Discover...· 0 citations
CoBind is presented, a multitask deep learning framework that jointly predicts RNA–compound interactions and nucleotide-level binding-site probabilities within a unified architecture and provides complementary nucleotide-level binding-site localization, supporting a site-aware view of RNA–ligand recognition under distr...
Shihang Wang, Lin Wang, Wei Zhao et al.· Journal of Medicinal Chemist...· 0 citations
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