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Sep 2026

k-mer-based Upstream Preprocessing of long reads for Isoform Discovery.

KuPID preprocessing simultaneously increases the f1 accuracy of isoform discovery pipelines by up to 11.6 points while decreasing the runtime by a factor of 2-3×; and increases downstream accuracy by filtering out extraneous reads.

Molly Borowiak, Y. Yu · 0 citations

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