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large language models

2,652 papers

#machine learning Open access Apr 2026

Accurate and task-agnostic modeling of enzymatic reactions through multimodal relational learning

ERAM aligns pre-trained molecular representations from Protein Language Model with the knowledge of enzyme catalysis by modeling enzymatic reactions as multi-relational data, and demonstrates its potential as a versatile and effective tool for enzyme catalysis research.

Yuansheng Huang, Lanqing Li, Wenjia Qian et al. · 2 citations
#natural language process... Open access Apr 2026

LaMGen: LLM-based 3D molecular generation for multi-target drug design

This study introduces LaMGen, an LLM-powered framework that leverages large-scale protein-ligand data and rotation-aware molecular encoding to rapidly produce chemically plausible multi-target candidates, achieving strong zero-shot generalization, superior molecular quality, and robust performance across dual- and trip...

Qun Su, Qiaolin Gou, Hui Zhang et al. · 1 citation
#computer vision Open access Jun 2026

BioTD: An Online Database of Biotoxins

The Biotoxins Database (BioTD) is the largest open-source database for toxins, offering open access to 14,607 data records (8,185 activity records), covering 8,975 toxins sourced from 5,220 references and patents across over 900 species.

Gaoang Wang, Hang Wu, Yang Liao et al. · 0 citations
#machine learning Open access Jul 2026

BBBP-Atlas: Unified Interpretable Modeling of Blood–Brain Barrier Permeability across Small Molecules and Peptides

BBBP-Atlas is proposed, a structure-aware BBB permeability prediction model designed for unified modeling of small molecules and peptides with the first cross-modal dataset OmniBBBP, which offers a versatile and cross-modal approach for single-compound prediction, batch screening, and dataset exploration for CNS drug d...

Xin Shen, Qun Su, Hao Luo et al. · 0 citations
#machine learning Open access Jun 2026

Targeting the intrinsically disordered AR-NTD through a machine learning-based enhanced sampling workflow

An integrated computational workflow that combines enhanced sampling techniques and machine learning collective variables to identify druggable conformations of the AR-NTD and elucidate the binding mechanism of its modulator, EPI-002 is introduced.

Kai Zhu, Huating Wang, Jin-Tu Zhang et al. · 0 citations
#large language models Book Jul 2026

Depression Symptoms and Relational Patterns in 187k ChatGPT Histories

ChatGPT histories should not be treated as clinical screening data but as evidence LLMs are increasingly used as informal support infrastructure, which is private, persistent, responsive, and available outside ordinary hours.

N. K. R. Sehgal, D. Folk, Lyle Ungar et al. · 0 citations
#large language models Open access Aug 2026

Title: Cyber-Biological Synchronization and Behavioral Vector Injection (BVI): Axiomatic Foundations, Topo-Information Dynamics, and Radix 00–32 Systemic Homeostasis

Archival Summary Package: Cyber-Biological Synchronization and Behavioral Vector Injection (BVI) Title: Cyber-Biological Synchronization and Behavioral Vector Injection (BVI): Axiomatic Foundations, Topo-Information Dynamics, and Radix 00–32 Systemic Homeostasis Authors: Kasiulevicius, Egidijus; Kasiulevicius, Azuolas;...

Egidijus Kasiulevičius, Azuolas Kasiulevicius, Saule Kasiuleviciute et al. · 0 citations

Communicating AI Uncertainty in Assistive Navigation for People with Visual Impairments

Visual impairments affect upwards of 2.2 billion people worldwide. As AI systems increasingly support navigation for people with visual impairments, how uncertainty is communicated becomes critical. Prior work shows that communicating uncertainty can improve trust calibration and decision-making, yet it remains underex...

Hayden Shaffer, Aahil Shaikh, He Zhang et al. · 0 citations
#large language models Open access Aug 2026

Silicon Sample Benchmark — Tier 3 (direct effect forecast) submission (team team_15)

Tier 3 (direct effect forecast) entry to the Silicon Sample Benchmark from team_15. We predict all 208 average treatment effects (16 message interventions x 13 preregistered outcomes) of a sealed ~18,000-person US megastudy on trust in climate scientists, blind and before any human data were released. The approach uses...

Jonne Kamphorst, Huanxing Chen, Michael S. Bernstein et al. · 0 citations
#large language models Open access Aug 2026

Hobbs: A General-Purpose Probabilistic Programming System for High Dimensional Bayesian Data Analysis in R

Abstract: General-purpose probabilistic programming makes Bayesian data analysis broadly accessible, but its computational cost can become prohibitive as model dimension grows. The R package hobbs (High dimensiOnal Bayesian omniBus Sampler) is a probabilistic programming language and system designed to make high-dimens...

Michael Kleinsasser · 0 citations
#large language models Open access Aug 2026

EduSkillBench: Measuring the Impact of Agent Skills on Single-Turn Educational Tasks

Agent Skills are reusable packages of procedural knowledge that augment large language model (LLM) agents at inference time. Educational agents are a natural target for such augmentation, because high-quality teaching behavior depends not only on factual knowledge but also on procedures for diagnosing misconceptions, s...

Yueyue Zhang, Xiaolong Wang, Keqian Li · 0 citations

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