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GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...
GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...
GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...
This pre-decision research note applies the verified SECM–SEFSC Augmented ACM Model III to the Federal Open Market Committee meeting of September 15–16, 2026. With a 25-basis-point increase in the federal funds target range heavily priced into markets, the analysis argues that the dominant market signal is likely to co...
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Preprint, version 1.0 (September 2026) The Transformer of 2017 still sits at the core of every current large language model, yet almost everything around it has been rebuilt, some parts repeatedly. This survey traces the architectural development of text-only LLMs from 2017 to early 2026 as four epochs, each driven by...
GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...
Authorship, provenance, and verification. The scientific problem, original method, and research direction belong to W. V. Pogosov. This project builds on his published and unpublished work developed before the involvement of an advanced large language model (LLM). During the subsequent LLM-assisted phase, the LLM produ...
Large language models can readily produce diverse and unusual outputs, yet increased variation does not by itself explain when a system becomes more capable of creative thought. This paper develops a preliminary hypothesis that prompt design may alter the effective dynamical regime of inference and, under some conditio...
The VisDrone-derived subset is used only as an industrial low-altitude proxy stress test: its high precision coexists with very low recall, so the result exposes domain-shift limitations, rather than demonstrating deployment-level industrial performance.
GATK-SV A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data. Table of Contents Requirements Citation Acknowledgements Quickstart Pipeline Overview Cohort mode Single-sample mode gCNV model Generating a reference panel Module Descriptions GatherSampleEvidence - Raw caller...
✨ Highlights Review skill updates as a real diff. Update previews render through a shared source diff viewer — file headers with change counts, line-number gutter, dashed red deletion and solid green addition rails, optional syntax highlighting, and readable fallbacks for malformed or oversized patches. (#2632) Side c...
Classical software memory leaks are allocations that outlive their intended lifetime. Tool-using large language model (LLM) agents exhibit an analogous failure that current “forgetting” mechanisms do not measure. A user or policy issues a forget request for a memory m*; the underlying store correctly drops the record,...
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A Blog post by IBM Granite on Hugging Face
We’re on a journey to advance and democratize artificial intelligence through open source and open science.
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