Skip to content
Open access

Unraveling the Complex Hydrogen-Bonding and Solvation Patterns of Fructose Tautomers via Complementary AIMD and Classical MD Simulations

Sep 2026 · ACS Physical Chemistry Au · Vol 6, pp. 1372 - 1386 · 0 citations · 54 references
Medicine

Abstract

Understanding the molecular-level hydration of fructose tautomers remains a challenge due to their rapid interconversion and structural complexity. A dual-scale approach was employed, combining long-time classical molecular dynamics (MD) and ab initio molecular dynamics (AIMD) to elucidate differences in the hydrogen-bonding networks of both pyranose and furanose tautomers with statistical and electronic accuracy. Our simulations highlight the inherent competition between intra- and intermolecular hydrogen bonds, driven by the limited number of hydroxyl donor and acceptor sites. Crucially, the formation of these internal bonds is driven by ring puckering in the flexible furanoses alongside the spatial orientation of the hydroxymethyl groups in both tautomer families. This structural interplay indirectly influences the entire intermolecular solvation shell, comprising both hydrophilic and hydrophobic regions. By correlating these competing intra- and intermolecular patterns with Bader charges and water dipole moments, we establish a quantitative electronic-structure basis for carbohydrate solvation. These insights provide a comprehensive atomistic framework that deepens our understanding of biologically relevant processes, such as recognition and docking efficiency within metabolic enzymes.

Read PDF

Similar papers

Aug 2026

Beyond the Isolated Halogen-Bond Dimer: Cooperative and Anticooperative Motifs in C6F4I2···HMTA.

Halogen bonding (XB) is often analyzed in terms of isolated dimers, yet under realistic solution conditions, it coexists with a dense, rapidly fluctuating network of weaker contacts whose net effect on bond strength is difficult to quantify. Here, we combine gas-phase quantum-chemical calculations with explicit-solvent...

D. V. Krutin, A. A. Titova, M. Kaplanskiy et al. · 0 citations
Aug 2026

Microscopic Structure and Macroscopic Properties of Mesitylene and 2-Alkanol Binary Mixtures: A Combined Experimental, Molecular Dynamics, and DFT Study.

This study provides a detailed microscopic and macroscopic investigation into the intermolecular interactions and thermophysical properties of binary mixtures containing mesitylene and a homologous series of 2-alkanols (from 2-propanol to 2-octanol). A combined approach utilizing molecular dynamics (MD) simulations, de...

Mohammad Almasi, Morteza Vatanparast, Nasim Rahmani-Ivriq et al. · 0 citations
Open access Sep 2026

Liquid-jet XPS and theoretical computations reveal solvation-driven shifts and deprotonation site in uracil.

Solute-solvent interactions are fundamental to understanding the stability, reactivity, and biological function of molecules. Spectroscopic techniques allow gaining molecular-level insights into these interactions. Here we explore the hydration of uracil, a model system for the behavior of biomolecules in an aqueous en...

Marine Fournier, Martin Procházka, Rémi Dupuy et al. · 0 citations
Open access Aug 2026

Benchmarking DFT for Chain-Length and Water Effects in Thermal Conia–Ene Cyclization

Reliable density functional theory (DFT) methods for thermally driven cyclization reactions remain insufficiently established, particularly for systems in which proton transfer, conformational preorganization, and weak environmental effects jointly shape the energy landscape. Here, we present a systematic benchmark of...

J. Gutiérrez-Flores, E. H. Huerta, Javier Serrano Medina et al. · 0 citations
Open access Aug 2026

Microsolvation of Protonated Glycine: Infrared Spectra from Data-Driven Quantum Many-Body Simulations.

Understanding how hydration reshapes the structure and conformational flexibility of biomolecular ions is essential for connecting gas-phase spectroscopy to behavior in aqueous environments. Glycine, the simplest amino acid, exhibits rich microsolvation behavior, with competing intra- and intermolecular hydrogen-bondin...

Zoe A. Solomon, R. Rashmi, Ruihan Zhou et al. · 0 citations
Oct 2026

Solvation structure and dynamics of choline chloride-based deep eutectic solvents with isomeric butanediol hydrogen bond donors.

Choline chloride-based deep eutectic solvents (DESs) are being investigated as redox flow battery electrolytes, where solvent viscosity plays a central role in governing ionic mobility, mass transport, and pumping efficiency. In this combined experimental and computational study, a series of DESs formed from choline ch...

Daniel Kim, Rathiesh R. Pandian, Yong Zhang et al. · 0 citations

We use cookies to run the site and, with your consent, for analytics and to show ads. See our Cookie Policy.