Dec 2025· arXiv.org· Vol abs/2512.16956· 0 citations· 44 references
Computer Science
TL;DR
This work proposes SpIDER (Spatially Informed Dense Embedding Retrieval), a dense retrieval approach that integrates LLM-based reasoning with graph-based exploration of the codebase and introduces SpIDER-Bench, a graph-structured benchmark curated from SWEPolyBench, SWEBench-Verified and Multi-SWE-bench, spanning Python, Java, JavaScript and TypeScript repositories.
Abstract
Retrieving code functions, classes or files relevant to a user query, bug report or feature request from large codebases is a fundamental challenge for Large Language Model (LLM)-based coding agents. Agentic approaches typically employ sparse methods like BM25 or dense embedding strategies to identify semantically relevant units. While dense embedding approaches can outperform BM25 by large margins, both ignore the graph-structured characteristics of the codebase. To address this, we propose SpIDER (Spatially Informed Dense Embedding Retrieval), a dense retrieval approach that integrates LLM-based reasoning with graph-based exploration of the codebase. We further introduce SpIDER-Bench, a graph-structured benchmark curated from SWEPolyBench, SWEBench-Verified and Multi-SWE-bench, spanning Python, Java, JavaScript and TypeScript repositories. SpIDER's graph-based candidate expansion attaches a structural reason for inclusion to each surfaced function (its seed and the edge type linking them), making the candidate set auditable while keeping the retrieval budget fixed. The graph is built from per-repository syntax trees, so it can be constructed on-demand at the start of a developer session rather than precomputed offline. Empirical results show that SpIDER consistently improves dense retrieval Recall@20 across every language and benchmark in SpIDER-Bench: by at least 13% relative (+0.05 to +0.12 absolute) along containment edges, rising to at least 27% relative (+0.11 to +0.19 absolute) once call edges are explored.
RepoNav is introduced, a lightweight post-retrieval interface that reorganizes retrieved snippets into a file-centered navigation scaffold that improves function-level localization and narrows the file-to-function gap.
Hong-Zheng Chai, Jia-Kun Li, Hong Yu et al.· 0 citations
FeatLens builds a feature index that links natural-language feature descriptions to function-level code entities and dynamically constructs a task-specific seed graph from the feature index and applies semantic-structural graph reasoning with personalized PageRank to select a compact reasoning graph.
Xu-Tian Li, Bo Xiong, Yi-Feng Zhu et al.· 0 citations
CrossCoder is proposed, a cross-repository code generation framework that explicitly incorporates external libraries into the retrieval context through a unified knowledge graph over repository and library entities that consistently improves both functional correctness and robustness to dependency-version changes.
Minh Le-Anh, Nam Le Hai, Quyen Tran et al.· 0 citations
The results indicate that front-loading code understanding into a reusable, codebase-specialised vector store enables small local models to deliver grounded and repository-specific answers, making the agent well suited as a privacy-preserving development tool for in-house scientific codebases.
Aaron Nobile, Andreas Adelmann, Mohsen Sadr· 0 citations
This work introduces ExecRetrieval, 939 Python tasks each paired with one execution-verified canonical implementation and up to four execution-verified buggy distractors, each generated by a mechanical mutation making a single targeted edit, and evaluates 23 dense embedding configurations plus BM25 under provider-nativ...
Aaryan Kapoor, Md Abdullah Al Hafiz Khan· 0 citations
We introduce C2C (From Codebase to Culprit), a framework for precise bug localization that progressively reduces the debugging search space across multiple levels of granularity: files, functions, and lines of code. To mirror developer's natural top-down debugging workflows, C2C integrates semantic retrieval and Hierar...
Ankur Garg, Corey Yang-Smith, Rishav Rishav et al.· 0 citations
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